BAMBE, DnaSP, ENCprime/SeqCount, LAMARC, MacClade, MEGA, Modeltest, MrBayes, PAML, PAUP*, PHYLIP, r8s, readseq, Seq-Gen, Sites, TreeView

Publication
In JM Hancock and MJ Zvelebil (Eds.), Dictionary of Bioinformatics and Computational Biology (pp. 39–40, 123–124, 146, 288–289, 305, 318, 337, 352, 388, 392, 398–399, 455, 457, 502, 522, 568). Wiley-Liss, Hoboken